PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 389aa    MW: 41310.8 Da    PI: 9.4835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0089genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-055678123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Gh_A06G0089 56 FICEICNKGFQREQNLQLHRRGH 78
                 89*******************88 PP

2zf-C2H2157.3e-05134156123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k++  ks+ + Hi+++
  Gh_A06G0089 134 WRCERCSKTYAVKSDWTAHIKSC 156
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.09E-65578No hitNo description
Gene3DG3DSA:3.30.160.606.3E-65578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.5E-55678IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00445678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035520099129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.09E-6129154No hitNo description
SMARTSM00355120134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAKLENSSSM AVSLIQAFQQ TDGVQSKKKR NLPGMPDPEA EVISLSPKSL LATNRFICEI  60
CNKGFQREQN LQLHRRGHNL PWKLRQRTDG NETRKKRVYV CPETSCVHHN PARALGDLTG  120
IKKHYCRKHC EKKWRCERCS KTYAVKSDWT AHIKSCGTKE YKCNCGTVFS RRDSFYTHRT  180
FCDALAEENA RAQAATSSPP PLTPSTTTMV SPGLSTQSSE MLGIPMGLSP PDPPPPTTSI  240
SASNGDVLVT IFASTPPLEA TSLSLSSPLY LSNNSFSSIF TAPSLQPAMS ATALLQKASQ  300
MGAAATSSPS LLRGLSFAVP SSSSTTPSTG HKPTSTLDLL GLGICGGGGG GRGGTSNGLS  360
ALFTQFGGGF NGEPGATTSY GAPNSSALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18295KLRQRTDGNETRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5244168e-32HQ524416.1 Gossypium herbaceum clone NBRI_F016 simple sequence repeat marker, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452690.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-121IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0B0NGI80.0A0A0B0NGI8_G
STRINGPOPTR_0002s26430.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-99indeterminate(ID)-domain 2